A fluorescent probe for detection of Hg²⁺ ions constructed by tetramethyl cucurbit[6]uril and 1,2-bis(4-pyridyl)ethene

• Xiaoqian Chen,
• Naqin Yang,
• Yue Ma,
• Xinan Yang and
• Peihua Ma

Beilstein J. Org. Chem. 2023, 19, 864–872, doi:10.3762/bjoc.19.63

• cucurbit[6]uril (TMeQ[6]) and 1,2-bis(4-pyridyl)ethene (G) were used to construct a supramolecular fluorescent probe G@TMeQ[6]. The host–guest interaction between TMeQ[6] and G was investigated using 1H NMR spectroscopy, single-crystal X-ray diffraction and various experimental techniques. The results show

• that TMeQ[6] and G form an inclusion complex with a host–guest ratio of 1:1 and the equilibrium association constant (Ka) was 2.494 × 104 M−1. The G@TMeQ[6] fluorescent probe can sensitively recognize Hg2+ ions by fluorescence enhancement. The linear range is 0.33 × 10−5–1.65 × 10−5 mol·L−1, R2

• = 0.9926, and the limit of detection is 4.12 × 10−8 mol·L−1. The fluorescent probe can be used to detect the concentration of Hg2+ ions in aqueous solution, and provides a theoretical basis for the development of new fluorescent probes for detecting heavy metal ions. Keywords: 1,2-bis(4-pyridyl)ethane

Chemical approaches to discover the full potential of peptide nucleic acids in biomedical applications

• Nikita Brodyagin,
• Martins Katkevics,
• Venubabu Kotikam,
• Christopher A. Ryan and
• Eriks Rozners

Beilstein J. Org. Chem. 2021, 17, 1641–1688, doi:10.3762/bjoc.17.116

Synthesis of 10-O-aryl-substituted berberine derivatives by Chan–Evans–Lam coupling and investigation of their DNA-binding properties

• Peter Jonas Wickhorst,
• Mathilda Blachnik,
• Denisa Lagumdzija and
• Heiko Ihmels

Beilstein J. Org. Chem. 2021, 17, 991–1000, doi:10.3762/bjoc.17.81

• as fluorescent probe in bioanalytical chemistry [15][16]. Because of these attractive properties of this lead structure, numerous berberine derivatives have been synthesized in order to further improve the biological activity [17][18][19][20][21][22][23][24][25][26]. Among those derivatives

The fluorescence of a mercury probe based on osthol

• Guangyan Luo,
• Zhishu Zeng,
• Lin Zhang,
• Zhu Tao and
• Qianjun Zhang

Beilstein J. Org. Chem. 2021, 17, 22–27, doi:10.3762/bjoc.17.3

• electrophoresis [7]. However, the application of these analytical methods in mercury detection is limited due to the complex sample pretreatment procedures, expensive instruments, and other factors [8][9]. Fluorescent-probe instruments have been widely used due to the advantages of the simple operation, low cost

• probe [23], OST as a probe for the detection of mercury has not been reported. In this paper, OST was used as a fluorescent probe since the fluorescence intensity of OST at 406 nm increased significantly when Hg2+ was added. The probe had a high selectivity and sensitivity for Hg2+ recognition and can

• , OST was used as the fluorescent probe to establish a new method for the determination of Hg2+. Within the range of 6.0 × 10−5 to 24.0 × 10−5 mol∙L−1, the change in the fluorescence intensity of the system had a good linear relationship with the concentration of mercury ions. The linear equation was y

Selected peptide-based fluorescent probes for biological applications

• Debabrata Maity

Beilstein J. Org. Chem. 2020, 16, 2971–2982, doi:10.3762/bjoc.16.247

• labeled with environmentally sensitive/FRET fluorophores have allowed direct detection/monitoring of biomolecules in aqueous media and in live cells. In this review, key peptide-based approaches for different biological applications are presented. Keywords: fluorescent probe; fluorophores; molecular

• ]. The attachment of pyrenes to the termini of a flexible peptide linker results in a ratiometric fluorescent probe (Figure 1C). Upon interaction with a biomolecule, the distance between the pyrenes changes, subsequently their monomer to excimer and vice versa fluorescence signal changes. However, the

The B & B approach: Ball-milling conjugation of dextran with phenylboronic acid (PBA)-functionalized BODIPY

• Patrizia Andreozzi,
• Lorenza Tamberi,
• Elisamaria Tasca,
• Gina Elena Giacomazzo,
• Marta Martinez,
• Mirko Severi,
• Marco Marradi,
• Stefano Cicchi,
• Sergio Moya,
• Giacomo Biagiotti and
• Barbara Richichi

Beilstein J. Org. Chem. 2020, 16, 2272–2281, doi:10.3762/bjoc.16.188

• , Poland 10.3762/bjoc.16.188 Abstract Mechanochemistry is an emerging and reliable alternative to conventional solution (batch) synthesis of complex molecules under green and solvent-free conditions. In this regard, we report here on the conjugation of a dextran polysaccharide with a fluorescent probe, a

• inside in the yield of the ball-milling reaction, we investigated to what extent the amount of PBA-BODIPY (1) in the reaction mixture affected the loading of the fluorescent probe. For this purpose, reactions were repeated using, respectively roughly 0.5 (Dex-1c) and 0.1 (Dex-1d) equivalents of 1

Synthesis of new fluorescent molecules having an aggregation-induced emission property derived from 4-fluoroisoxazoles

• Kazuyuki Sato,
• Akira Kawasaki,
• Yukiko Karuo,
• Atsushi Tarui,
• Kentaro Kawai and
• Masaaki Omote

Beilstein J. Org. Chem. 2020, 16, 1411–1417, doi:10.3762/bjoc.16.117

• -opening reaction of 4-fluoroisoxazoles and exhibited highly fluorescent luminescence and aggregation-induced emission (AIE), showing promise as a new fluorophore. Keywords: aggregation-induced emission; boron ketoiminates; fluorescent probe; α-fluorinated boron ketoiminates; 4-fluoroisoxazoles

Photoreversible stretching of a BAPTA chelator marshalling Ca²⁺-binding in aqueous media

• Aurélien Ducrot,
• Arnaud Tron,
• Robin Bofinger,
• Ingrid Sanz Beguer,
• Jean-Luc Pozzo and
• Nathan D. McClenaghan

Beilstein J. Org. Chem. 2019, 15, 2801–2811, doi:10.3762/bjoc.15.273

• liberation of Ca2+ upon photexcitation in solution, azobenzene macrocyle 1 was used as a reversible Ca2+ photoejector in the presence of a Ca2+-selective “turn-on” fluorescent probe (3, Figure 7) [41]. The fluorescence of BODIPY dye 3 in the absence of calcium, is quenched by an intramolecular photoinduced

• + concentration = 0.017, 0.038, 0.065, 0.100, 0.150, 0.225, 0.35, 1.35 and 39 μM). Insets: Hill plots for the absorbance change at 305 nm as a function of free Ca2+, affording log Kd (x-axis intercept). a) Reversible Ca2+ exchange between photoregulated host 1 and turn-“on” fluorescent probe 3. b) Blue: 3 (5 µM

Identification of optimal fluorescent probes for G-quadruplex nucleic acids through systematic exploration of mono- and distyryl dye libraries

• Xiao Xie,
• Michela Zuffo,
• Marie-Paule Teulade-Fichou and
• Anton Granzhan

Beilstein J. Org. Chem. 2019, 15, 1872–1889, doi:10.3762/bjoc.15.183

• knowledge, they have not been studied as fluorescent probes for G4 structures so far. On the contrary, dye 17n (Figure 1) was reported as a fluorescent probe for G4-DNA during the preparation of the present work earlier this year [61]. Of note, numerous mono-styryl dyes combining indole and quinolinium or

Complexation of a guanidinium-modified calixarene with diverse dyes and investigation of the corresponding photophysical response

• Yu-Ying Wang,
• Yong Kong,
• Zhe Zheng,
• Wen-Chao Geng,
• Zi-Yi Zhao,
• Hongwei Sun and
• Dong-Sheng Guo

Beilstein J. Org. Chem. 2019, 15, 1394–1406, doi:10.3762/bjoc.15.139

• charge-transfer dyes. P-TPE was included in the study as a classical aggregation-induced emission (AIE) dye and TPS as a representative of a two-photon fluorescent probe. Ru(dcbpy)3 was involved as a member of luminescent transition-metal complexes. Of our special interest in the present study is to

• opportunity to construct organic luminescent materials and could be engaged in the manufacture of high-performance supramolecular dye lasers [24][48]. The complexation of GC5A with the two-photon fluorescent probe Two-photon excitation microscopy is a fluorescence imaging technique utilizing near-infrared

• photons as the excitation source. The fluorescent probe simultaneously absorbs two low energy photons to reach the excited state followed by fluorescence [57]. Acedan (6-acetyl-2-(dimethylamino)naphthalene) is a well-known probe with two-photon absorption that has been utilized in two-photon microscopy

Stereo- and regioselective hydroboration of 1-exo-methylene pyranoses: discovery of aryltriazolylmethyl C-galactopyranosides as selective galectin-1 inhibitors

• Alexander Dahlqvist,
• Axel Furevi,
• Niklas Warlin,
• Hakon Leffler and
• Ulf J. Nilsson

Beilstein J. Org. Chem. 2019, 15, 1046–1060, doi:10.3762/bjoc.15.102

Novel solid-phase strategy for the synthesis of ligand-targeted fluorescent-labelled chelating peptide conjugates as a theranostic tool for cancer

• Sagnik Sengupta,
• Mena Asha Krishnan,
• Premansh Dudhe,
• Ramesh B. Reddy,
• Bishnubasu Giri,
• Sudeshna Chattopadhyay and
• Venkatesh Chelvam

Beilstein J. Org. Chem. 2018, 14, 2665–2679, doi:10.3762/bjoc.14.244

• chelating core through carboxylic acid of lysine and attachment of fluorescent probe via ε-amino group present in the lysine amino acid. Increased hydrophobicity due to the introduction of long chain amino acids, aromatic amino acids in the targeted ligand peptide conjugate 13 would decrease the solubility

An uracil-linked hydroxyflavone probe for the recognition of ATP

• Márton Bojtár,
• Péter Zoltán Janzsó-Berend,
• Dávid Mester,
• Dóra Hessz,
• Mihály Kállay,
• Miklós Kubinyi and
• István Bitter

Beilstein J. Org. Chem. 2018, 14, 747–755, doi:10.3762/bjoc.14.63

• ’-amino-3-hydroxyflavone-based fluorescent probe (UHF) for the selective recognition of ATP. The theoretical results showed that the base-pairing interactions are feasible in the supramolecular structre of UHF∙ATP. The synthesized probe showed large fluorescence enhancement and a ratiometric response

Polarization spectroscopy methods in the determination of interactions of small molecules with nucleic acids – tutorial

• Tamara Šmidlehner,
• Ivo Piantanida and
• Gennaro Pescitelli

Beilstein J. Org. Chem. 2018, 14, 84–105, doi:10.3762/bjoc.14.5

Development of a fluorogenic small substrate for dipeptidyl peptidase-4

• Futa Ogawa,
• Masanori Takeda,
• Kanae Miyanaga,
• Keita Tani,
• Ryuji Yamazawa,
• Kiyoshi Ito,
• Atsushi Tarui,
• Kazuyuki Sato and
• Masaaki Omote

Beilstein J. Org. Chem. 2017, 13, 2690–2697, doi:10.3762/bjoc.13.267

• probes can act as good sensors for enzymes but the fluorophore unit is usually large because fused aromatic rings and an elongated π-conjugated system are necessary to impart appropriate fluorescent properties to the probe [14]. The molecular size of the fluorescent probe is therefore large, which is

Isoxazole derivatives as new nitric oxide elicitors in plants

• Anca Oancea,
• Emilian Georgescu,
• Florentina Georgescu,
• Alina Nicolescu,
• Elena Iulia Oprita,
• Catalina Tudora,
• Lucian Vladulescu,
• Marius-Constantin Vladulescu,
• Florin Oancea and
• Calin Deleanu

Beilstein J. Org. Chem. 2017, 13, 659–664, doi:10.3762/bjoc.13.65

• indicator. The method is based on the oxidation of the non-fluorescent probe of 2’,7’-dichlorodihydrofluorescein diacetate to the highly fluorescent 2’,7’-dichlorofluorescein diacetate [62][63]. Intracellular NO was visualized using 4-amino-5-methylamino-2’,7’-dichlorodihydrofluorescein diacetate (DAF-FM

Amidofluorene-appended lower rim 1,3-diconjugate of calix[4]arene: synthesis, characterization and highly selective sensor for Cu²⁺

• Rahman Hosseinzadeh,
• Mohammad Nemati,
• Reza Zadmard and
• Maryam Mohadjerani

Beilstein J. Org. Chem. 2016, 12, 1749–1757, doi:10.3762/bjoc.12.163

• and fluorescent probe for Cu2+ detection. The sensitivity and selectivity of chemosensor L toward Cu2+ has been investigated by spectroscopic methods. This sensor has a high affinity (Ka = 1.8 × 106 M−1) for copper ions. The competitive metal-ion titrations by fluorescence spectroscopy showed that Cu2

New synthetic strategies for xanthene-dye-appended cyclodextrins

• Milo Malanga,
• Andras Darcsi,
• Mihaly Balint,
• Gabor Benkovics,
• Tamas Sohajda and
• Szabolcs Beni

Beilstein J. Org. Chem. 2016, 12, 537–548, doi:10.3762/bjoc.12.53

• of this evergreen class of dyes is still an ongoing process [5][6]. Fluorescein is the most widely used fluorescent probe in biological applications and in particular for covalently labeling proteins. Rhodamine derivatives are robust dyes that find application as fluorophores for microscopy, in cell

Synthesis and surface grafting of a β-cyclodextrin dimer facilitating cooperative inclusion of 2,6-ANS

• Lars W. Städe,
• Thorbjørn T. Nielsen,
• Laurent Duroux,
• Reinhard Wimmer,
• Kyoko Shimizu and
• Kim L. Larsen

Beilstein J. Org. Chem. 2015, 11, 514–523, doi:10.3762/bjoc.11.58

• negligible. Inclusion complex with free β-CD dimer in solution Host–guest interactions with the fluorescent probe 2,6-ANS were evaluated for the β-CD dimer by steady-state fluorescence spectroscopy and compared to that of the parent β-CD and 2,6-ANS. In water, 2,6-ANS displays only weak fluorescence

Pyrene-modified PNAs: Stacking interactions and selective excimer emission in PNA₂DNA triplexes

• Alex Manicardi,
• Lucia Guidi,
• Alice Ghidini and
• Roberto Corradini

Beilstein J. Org. Chem. 2014, 10, 1495–1503, doi:10.3762/bjoc.10.154

• as a function of DNA concentration (Figure 3a). The hysteresis observed between melting and annealing curves (Supporting Information File 1, Table S1) is also indicative of the formation of triplex structures between the PNAs and the DNA. Evaluation of pyrene-modified PNA2 as fluorescent probe In

• hybridization, a property which is very important also in the case of more elaborated methods such as gated detection. These characteristics make PNA2 a very good fluorescent probe, with very high single-base selectivity in both thermal stability and excimer formation upon binding to target DNA. Thus, the

A new synthetic protocol for coumarin amino acid

• Xinyi Xu,
• Xiaosong Hu and
• Jiangyun Wang

Beilstein J. Org. Chem. 2013, 9, 254–259, doi:10.3762/bjoc.9.30

• , Wuhan 430070, China 10.3762/bjoc.9.30 Abstract The hydrochloride of the racemic amino acid (2-(7-hydroxycoumarin-4-yl)ethyl)glycine, which can serve as a fluorescent probe in proteins, and two halogen derivatives of it, were synthesized by using a new synthetic protocol in five steps. It is less costly

• and relatively easy to prepare this kind of fluorescent amino acid with the new synthetic method. Furthermore, it can be applied to synthesize other derivatives of the coumarin amino acid with some specific properties. Keywords: coumarin; fluorescent probe; halogen derivatives; non-natural amino acid

Ratiometric fluorescent probe for enantioselective detection of D-cysteine in aqueous solution

• Xiao-bo Zhou,
• Wing-Hong Chan,
• Albert W. M. Lee and
• Chi-Chung Yeung

Beilstein J. Org. Chem. 2011, 7, 1508–1515, doi:10.3762/bjoc.7.176

• Xiao-bo Zhou Wing-Hong Chan Albert W. M. Lee Chi-Chung Yeung Department of Chemistry, Hong Kong Baptist University, Kowloon Tong, Hong Kong SAR, China 10.3762/bjoc.7.176 Abstract A ratiometric fluorescent probe based on a Cd2+–ACAQ complex was designed and demonstrated for the chemo- and

• ensemble for selective detection of Cys and Hcy [34]. Continuing our interests in the design and the synthesis of fluorescent chemosensors for biologically active molecules, we describe herein a ratiometric fluorescent probe that can be exploited for the enantioselective recognition of cysteine in aqueous

The allylic chalcogen effect in olefin metathesis

• Yuya A. Lin and
• Benjamin G. Davis

Beilstein J. Org. Chem. 2010, 6, 1219–1228, doi:10.3762/bjoc.6.140

• previously optimized by our group, compound 25 was efficiently functionalized with an allyl sulfide derived fluorescent probe 26 via CM in aqueous media to demonstrate the utility of functionalization of peptides and proteins by the Mukaiyama aldol reaction (Scheme 10). Allyl selenides are superior

Synthesis of the fluorescent amino acid rac-(7-hydroxycoumarin-4-yl)ethylglycine

• Manfred Braun and
• Torsten Dittrich

Beilstein J. Org. Chem. 2010, 6, No. 69, doi:10.3762/bjoc.6.69

• Manfred Braun Torsten Dittrich Institute of Organic and Macromolecular Chemistry, University of Düsseldorf, Universitätsstr. 1, D-40225 Düsseldorf, Germany 10.3762/bjoc.6.69 Abstract The hydrochloride of the racemic amino acid (7-hydroxycoumarin-4-yl)ethylglycine, a versatile fluorescent probe in

• proteins, has been synthesized in five steps from commercially available (7-hydroxycoumarin-4-yl)acetic acid. The key step involves the alkylation of a glycine–enolate equivalent. Keywords: alkylation; coumarin; fluorescent probe; glycine; protecting group; Introduction The incorporation of non-natural

• developed [4][5][6][7][8][9], an easy synthetic access to amino acids with suitable fluorophoric groups that provide tailor-made spectroscopic properties became the next crucial step. The requirements of a suitable fluorescent probe are largely met by (7-hydroxycoumarin-4-yl)ethylglycine (1) (Figure 1

Anthracene coupled adenine for the selective sensing of copper ions

• Kumaresh Ghosh and
• Tanushree Sen

Beilstein J. Org. Chem. 2010, 6, No. 44, doi:10.3762/bjoc.6.44

• decreased in the presence of Cu2+ compared to 2 and thus underlines the fact that the sensing ability for metal ions of adenine motif is appreciable and effective when the fluorescent probe resides in close proximity to the WC/HG site. We believe that these observations regarding the interaction between the